PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00032286-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 269aa    MW: 31000.5 Da    PI: 9.0683
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00032286-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.7e-161150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i n+s r+ tf kR++g++KK +ELS+LC+++ + ii+ +
  WALNUT_00032286-RA 11 ITNDSARKATFKKRKKGLMKKMSELSTLCGIQTCAIIYCP 50
                        89***********************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47148IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-22160IPR002100Transcription factor, MADS-box
CDDcd002669.17E-20285No hitNo description
PRINTSPR004045.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KMSELSTLCG IQTCAIIYCP YDSQPEVWPS  60
AMGVQRAIVR FKKMPEAEQS RKMVNQDIFL RQRISKAEEQ LKKQQRENRE KEMTQVMYRS  120
LVGDQGLQNL SVVDLKDLGW LVEKNIEEIE EKIKSLQAHQ MPPPQVVTVT SSHMISSTHD  180
LEKNDQAAKN TTDTAMDPTV QNQQWLTELL KPNDQNVGFG RNEDMMEPQN HQWLMDLLKS  240
NENVGFGKNE DMLPYGFNGN GLWSSFPFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382260.14e-83hypothetical protein POPTR_0005s00420g
SwissprotQ9FJK37e-58AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF694e-83U5GF69_POPTR; Uncharacterized protein
STRINGVIT_14s0060g00300.t018e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-56AGAMOUS-like 80